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Table 1 List of variables to code from the studies, including key sources of heterogeneity known to influence the effects of herbivores on tundra ecosystems

From: What are the effects of herbivore diversity on tundra ecosystems? A systematic review protocol

Topic

Coding variable

Variable description

Source

Article ID

author_list

List of authors

P

 

title

Title of the publication

P

 

year

Year of publication

P

 

journal

Journal or publishing house

P

 

language

Language of the publication

P

 

study_ID

Unique ID number for study

C

 

searchable_pdf

Whether the document allows for automated text searches

P

Study location

country

Country or region name

P

 

locality

Site name describing the locality, as specified in the study

P

 

coordinate_source

Whether coordinates are provided in the text, based on maps, figures or place names

P

 

coordinates_N, coordinates_E

Geographic coordinates in decimal degrees

P

 

elevation

Elevation (m a.s.l.)

P

 

elevation_DEM

Elevation (m a.s.l.) extracted from digital elevation model

D

Study type

study_design

Whether the study involves experimental manipulations, observational approaches or whether the study design is unclear

C

 

diversity_contrast

Approach used to create or assess the difference in herbivore diversity, such as exclosures or spatial contrasts

C

 

size_selective_exclosures

Does the study use different exclosures that prevent access of different sized herbivores?

C

 

spatial_extent

Size of the study area

C

 

spatial_resolution

Spatial scale at which the outcome is reported for each study

C

 

temporal_resolution

Interval between measurements of the outcome

C

 

sampling_frequency

Frequency of measurements

C

 

year_start

Year when the study started

P

 

year_end

Year when the study finished

P

Exposure and comparator

herbivore_data

How is the composition of the herbivore assemblages assessed?

C

 

herbivore_ID_higher_diversity

Species (or group) list in the areas with higher herbivore diversity

P

 

herbivore_ID_lower_diversity

Species (or group) list in the areas with lower herbivore diversity

P

Outcome

measured_response_variable

What was measured in areas exposed to different herbivore diversity?

P/C

 

reported_units

Units in which the response variable is reported; "unitless" if there is no unit

P

 

value_higher_diversity

Value of the outcome in the higher diversity area

P

 

value_lower_diversity

Value of the outcome in the lower diversity area

P

 

value_type

Does the value refer to the mean, median, etc

P

 

variability_higher_diversity

Variability of the outcome in the higher diversity area

P

 

variability_lower_diversity

Variability of the outcome in the lower diversity area

P

 

variability_type

Type of variability measurement (SE, confidence intervals (CI), etc.)

P

 

sample_size_higher_diversity

Number of observations in the higher diversity area

P

 

sample_size_lower diversity

Number of observations in the lower diversity area

P

 

effect_size

Value of the comparison between areas with different diversity

P

 

effect_size_variability

Variability of the comparison

P

 

effect_size_variability_type

Type of variability measurement (SE, confidence intervals (CI), etc.)

P

 

effect_size_direction

Direction of the comparison, or unclear

C

 

effect_size_sample_size

Number of observations for the comparison if reported

P

 

effect_size_type

Type of comparison (e.g. model estimate)

C

 

effect_size_comments

Any additional comments

C

 

statistical_test

Type of statistical test reported (e.g. paired t-test)

P

 

statistical_test_value

Value of the test statistic

P

 

statistical_test_df

Degrees of freedom of the statistic

P

 

statistical_test_p

p-value of the statistical test

P

 

outcome_comments

Any additional comments

C

 

more_data

Is there data available in the paper that is not extractable in its current form?

C

Study validity assessment

bias_risk_criterion1

Biases due to uncontrolled confounding variables that influence both the herbivore diversity levels and the response variable

C

 

bias_risk_criterion2

Biases arising from systematic differences in the selection of areas into the study or analyses after treatment

C

 

bias_risk_criterion3or4

Biases arising from misclassification or measurement of contrasts of herbivore diversity (observational studies) or treatments (experimental studies)

C

 

bias_risk_criterion5

Biases arising from systematic differences in measurements of outcomes

C

 

bias_risk_criterion6

Biases in reporting of study findings

C

 

bias_risk_criterion7

Biases due to error in applied statistical methods

C

 

bias_risk_comments

Please indicate any relevant comments; if there were confounding variables please report them here

C

Context

distance_to_treeline

Distance (km) to southern border of arctic subzone E

D

 

distance_from_coast

Distance (km) to the coast

D

 

bioclimatic_zone

Bioclimatic zone A to E, or "other"

D

 

temperature

Temperature related variable(s) extracted from WorldClim

D

 

precipitation

Precipitation related variable(s) extracted from Worldclim

D

 

growing_season

Duration of growing season (days)

D

 

productivity

Value of NDVI (vegetation greenness)

D

 

recent_warming

Extent of recent warming

D

 

recent_greening

Extent of recent greening

D

 

extent_of_recent__change

Extent of recent change in growing season length

D

 

soil_chemistry

Soil chemistry

C

 

soil_texture

Broad categories of soil texture

C

 

soil_moisture

Soil moisture as described in the study

C

 

soil_type

Soil type as reported by the authors

P

 

soil_type_D

Soil type

D

 

permafrost

Presence of permafrost

C

 

permafrost_D

Presence of permafrost

D

 

habitat_type

Habitat types using the broad categories defined in CAVM

C

 

habitat_type_D

Habitat types

D

 

management_focus

Whether the study is framed within a management context

C

 

conservation_focus

Whether the study is framed within a conservation context

C

  1. The coding variables are grouped into broader topics. Source indicates where the data is extracted from: P for publication, D for digital spatial data layers and C classified by the reviewers based on information available in the publication. More detailed descriptions, examples of the variables and references for the digital spatial data (D) are provided in Additional file 3